PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 301aa    MW: 33287.6 Da    PI: 5.6479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0701genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22e-14219279362
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                  + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN+ L k+++e+ k+  ++l  +
  Gh_D02G0701 219 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENEWLlKEKAERTKERFKQLMEK 279
                  679**************************************86267788888888887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-9217281IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473219271IPR004827Basic-leucine zipper domain
PfamPF001705.4E-13219279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-9221272No hitNo description
CDDcd147072.09E-17221267No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-12222276No hitNo description
PROSITE patternPS000360224239IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASSTSNSRN SDLSRRSTTS SSTKPLLLTD QKTNDDNENR LSSTMTVDGI LRNVYSVAPS  60
TETTLVDASI TLIDAPIPNS VSENPEVPQV QTVADCNNNV AKSVDEVWRE IVSGERKEIT  120
MKEEVPDEMM TLEDFLAKAG AVEEAAAVAS AEVKLHPDRL SGGVYTFDPV GGGAFQILDK  180
MEGSIVGLGN GMEVIGSGGG GGRGKRGRGV LMEPLDKAAQ QRQRRMIKNR ESAARSRERK  240
QAYQVELESL AVKLEEENEW LLKEKAERTK ERFKQLMEKV VPVVEQRRPP RMLRRVRSLQ  300
W
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.180110.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517850.0EF651785.1 Gossypium hirsutum transcription factor TF3 (TF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482412.10.0PREDICTED: G-box-binding factor 4 isoform X1
SwissprotP427771e-65GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0D2RHB40.0A0A0D2RHB4_G
STRINGVIT_18s0072g00470.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-43bZIP family protein